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Compound

Compound

Kaibo Feng

Description

A chemical substance composed of many identical molecules (or molecular entities) containing atoms from more than one chemical element held together by chemical bonds. (wiki)

Node Properties

  • biocyc_ids - BioCyc identifiers (list)

  • canonical_smiles - A unique ordering for the atoms generated from a canonicalization algorithm

  • CHEBI_ids ChEBI  identifiers (list)

  • chembl_ids ChEMBL identifiers (list)

  • description - Compound definition (ChEBI)

  • drugbank_ids DrugBank identifiers (list)

  • identifier - Main identifier (priority ChEBI then ChEMBL)

  • inchi IUPAC International Chemical Identifier (InChI)

  • inchikey - A condensed, hashed version, of the full InChI (27 character long). Created using SHA-256 algorithm

  • inchikey_prefix - First 14 characters result from a SHA-256 hash of the connectivity information

  • kegg_compound_ids - KEGG Compounds identifiers (list)

  • kegg_drug_ids - KEGG Drug identifiers (list)

  • license - If DrugBank is only identifier (CC BY-NC 4.0). Nodes could be removed in future updates (only 125 nodes)

  • max_phase - Maximum clinical trial phase

  • name - Compound name

  • pdb_ligand_ids - PDB ligand identifiers (list)

  • pref_name - Preferred compound name

  • pubchem_compound_ids - PubChem identifiers (list)

  • smiles - Simplified Molecular-Input Line-Entry System describes the structure of compound using short sequence of characters

  • standardized_smiles - RDKit SMILES standardisation

  • synonyms - Alternative names for compound

  • url DrugBank link

  • vestige - If compound is removed from ChEMBL, then vestige = True

  • xref - Alternative compound identifiers

  • xrefs - Alternative compound identifiers (to be unified with xref)

  • source - Source of node information

  • sources - Source(s) of node information (to be unified with source)

Update Information

V5        2,460,743 nodes

V4        2,386,140 nodes 

V3        2,165,016 nodes

V2        2,165,016 nodes

V1        2,112,572 nodes

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