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Pathway

Pathway

Illustration by David S. Goodsell, Scripps Research and RCSB Protein Data Bank

Description

A series of actions among molecules in a cell that leads to a certain product or change within that cell, such as spurring cell movement, assembling new molecules, or turning genes on and off. (NIGMS)

Node Properties

  • identifier - Identifier from source/sources database

  • level - Pathway level from KEGG or MetaCyc

  • license - if node from WikiPathways, CC by 4.0

  • name - Name from source/sources database

  • reactome_idReactome identifier

  • synonyms - Alternative names from Reactome

  • url - Link to WikiPathways  entry

  • versionReactome version number

  • vestige - True, if the node is present in SPOKE, but was not found in latest WikiPathways update

  • vestige_ids - identifiers in previous version

  • sourceWikiPathways

  • sourcesKEGG, MetaCyc, and Reactome

Update Information

V5        5,108 nodes

V4        4,897 nodes

V3        5,872 nodes

V2        5,873 nodes

V1        3,599 nodes

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