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Protein

Protein

Spencer Phillips

Description

A large, biological molecule composed of amino acids. Proteins are essential for all life processes. They are arranged in a specific order determined by the genetic code and folded into a specific three-dimensional shape with well-defined structures. Protein structures include alpha helixes, short, spiral-shaped sections, and beta sheets, pleated sections. (NIGMS)

Node Properties

  • chembl_idChEMBL identifier

  • delete - Will be removed from future versions.

  • description - Full protein name

  • EC - List of ECs

  • end - If polyprotein, cleavage site end (C-terminus)

  • gene - List of gene symbols

  • identifierUniProt protein identifier

  • If polyprotein, UniProt protein identifier - chain ID (ex. A0A089XDS9-PRO_5023430874)

  • isoform - List of isoforms

  • license - CC BY-NC 3.0

  • nameUniProt protein name 

  • If polyprotein, UniProt chain ID (ex. PRO_5023430874)

  • org_nameNCBI Taxonomy name

  • org_ncbi_idNCBI Taxonomy identifier

  • polyprotein - If polyprotein, UniProt protein identifier ex. A0A089XDS9)

  • reviewed - Reviewed (SwissProt)

  • start - cleavage site start (N-terminus)

  • vestige - True, if the node is present in SPOKE, but was not found in latest UniProt update

  • source - Main database (UniProt)

Update Information

V5        38,954,270 nodes

V4        39,439,860 nodes

V3        39,439,861 nodes

V2        39,439,861 nodes

V1        39,405,501 nodes

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