top of page

DOWNREGULATES_VdG

Last Updated

Current

node_web_buttons_proteindomain copy 2.png
node_web_buttons_proteindomain copy 2.png

Description

eQTLs stand for expression quantitative trait loci, and they are genomic loci that explain variation in gene expression. The DOWNREGULATES_VdG edge indicates that the genetic Variant downregulates the expression of the Gene it is connected to.

Properties

  • alternative_allele - Any base, other than the reference, that is found at that locus

  • beta - Regression coefficient from the linear model.

  • p_value_permuted - P-values based on 1000 permutations

  • reference_allele - The most common allele

  • sources - eQTL Catalogue

  • study - GTEx, FUSION, Bossini-Castillo_2019, CommonMind, PhLiPS, HipSci, Braineac2, GEUVADIS, Alasoo_2018, iPSCORE, Schwartzentruber_2018, or Young_2019

  • tissue - Anatomy name

  • tissue_id - Uberon identifier

Updates

V5        1,375 edges

V4        1,375 edges

bottom of page