
Last Updated
Current


Description
Classification of genes based on single cell type expression, determining the number of genes elevated in a particular cell type compared to all other cell types.
Properties
distribution -
Detected in single - Detected in a single tissue/region/cell type
Detected in some - Detected in more than one but less than one third of
tissues/regions/cell types
Detected in many - Detected in at least a third but not all tissues/regions/cell types
Detected in all - Detected in all tissues/regions/cell types
Not detected - nTPM < 1 in all tissues/regions/cell types
group -
Enriched - nTPM in a particular tissue/region/cell type at least four times
any other tissue/region/cell type
Group enriched - nTPM in a group (of 2-5 tissues, brain regions, single
cell types or cell lines, or 2-10 blood cell types) at least four times any
other tissue/region/cell line/blood cell type/cell type
Enhanced - nTPM in a one or several (1-5 tissues, brain regions or cell lines,
or 1-10 immune cell types or single cell types) at least four times the
mean of other tissue/region/cell types
Low specificity - nTPM ≥ 1 in at least one tissue/region/cell type but not
elevated in any tissue/region/cell type
Not detected - nTPM < 1 in all tissue/region/cell types
ntpm - Normalized transcript expression values
specificity_score - TS/CS-score (Tissue Specificity/Cell Specificity score)
sources - Human Protein Atlas
Updates
V5 54,158 edges
V4 63,022 edges
V3 49,450 edges
V2 49,450 edges
V1 49,450 edges